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Omophub MCP server

by OMOPHub·io.github.OMOPHub/omophub-mcp·v1.1.0·6 stars
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Search, lookup, map, and navigate OMOP medical vocabularies via AI agents

A85/100grade A
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Safety scan
A85/100

full report

Adoption
Growing

6 stars

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If you have run it, two minutes of your experience saves the next person an afternoon.

Omophub tools

No tool declarations could be read from the package source. They show once the server is installed.

Public scan report

scanner v0.1.10 · 2026-09-28 · same rubric, same numbers if you re-run it

no findings
  • Code scan41 source files scanned25/25
  • –Live reliabilityno gateway calls yet and no remote to proben/a
  • –Tool poisoningtools not inspected (local package is not executed); not countedn/a
  • Auth qualitystatic API keys via environment variables6/15
  • Maintenancelast push 20 days ago15/15
  • Maintainer identityregistry namespace matches repository owner; GitHub account older than a year9/10
Overall 85/100. Components that don't apply are left out of the denominator. Any critical finding is an F.RubricAppeal a findingJSON

How Omophub compares

Against every graded Web search MCP server, from our own scans and uptime checks. Updated after each scan run.

Safety score
85/100
higher than 75% of 3,470 Web search servers
GitHub stars
6
more than 81% of 1,786 Web search servers

Install Omophub in Claude Code, Cursor or VS Code

Runs npx -y @omophub/omophub-mcp on your machine. Read the scan report first; the gateway never runs local packages.

claude mcp add omophub-mcp -- npx -y @omophub/omophub-mcp
Add to Cursor

What the publisher says

From the Omophub repository's README, as published. We do not edit it. Read it on GitHub

OMOPHub MCP Server

Medical vocabularies for AI agents. Search, map, and navigate 11M+ OMOP concepts: SNOMED CT, ICD-10, RxNorm, LOINC, and more. Directly from Claude, Cursor, VS Code, or any MCP-compatible client.

Quick Start · Tools · Examples · Docs · Website

Why OMOPHub MCP?

Working with medical vocabularies today means downloading multi-gigabyte CSV files, loading them into a local database, and writing SQL to find what you need. Every time.

OMOPHub MCP Server gives your AI assistant instant access to the entire OHDSI ATHENA vocabulary. No database setup, no CSV wrangling, no context switching. Just ask.

You: "Map ICD-10 code E11.9 to SNOMED"

Claude: Found it - E11.9 (Type 2 diabetes mellitus without complications)
        maps to SNOMED concept 201826 (Type 2 diabetes mellitus)
        via standard 'Maps to' relationship.

Use cases:

  • Concept lookup - Find OMOP concept IDs for clinical terms in seconds
  • Cross-vocabulary mapping - Map between ICD-10, SNOMED, RxNorm, LOINC, and 120+ vocabularies
  • Hierarchy navigation - Explore ancestors and descendants for phenotype definitions
  • Concept set building - Let your AI agent assemble complete concept sets for cohort definitions
  • Code validation - Verify medical codes and check their standard mappings

Quick Start

1. Get an API Key

Sign up at omophub.com → create an API key in your dashboard.

2. Add to Your AI Client

Claude Desktop

Open Claude Desktop settings > "Developer" tab > "Edit Config". Add to claudedesktopconfig.json:

{
  "mcpServers": {
    "omophub": {
      "command": "npx",
      "args": ["-y", "@omophub/omophub-mcp"],
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      }
    }
  }
}

Claude Code

claude mcp add omophub -- npx -y @omophub/omophub-mcp
# Then set OMOPHUB_API_KEY in your environment

Cursor

Open the command palette and choose "Cursor Settings" > "MCP" > "Add new global MCP server". Add to .cursor/mcp.json:

{
  "mcpServers": {
    "omophub": {
      "command": "npx",
      "args": ["-y", "@omophub/omophub-mcp"],
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      }
    }
  }
}

VS Code

Add to .vscode/mcp.json:

Shortened. The full README is on GitHub.

Nothing above is checked by us. What we check is on the safety report.

Omophub: common questions

Is Omophub MCP server safe?
Yes, by our scan: it is graded A (85/100). Read the Omophub safety report
How do I install Omophub?
It runs on your machine. Copy the Claude Code, Cursor, VS Code or Claude Desktop config from the install section.
Does Omophub need an API key?
Yes. The registry entry asks for OMOPHUB_API_KEY.
Is Omophub maintained?
The last commit was 58 days ago (2026-09-07). The latest release is v1.1.0.
What can I use instead of Omophub?
Servers from other publishers that do the same job: Google Maps MCP Server.
How does Omophub compare with other Web search MCP servers?
safety score 85/100 (higher than 75% of 3,470 Web search servers); github stars 6 (more than 81% of 1,786 Web search servers). Full comparison.

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