Mmcp.market

simpy skill

by K-Dense-AI·K-Dense-AI/scientific-agent-skills·47k stars·MIT

Build, inspect, test, and analyze bounded process-based discrete-event simulations with SimPy, including events, resources, interrupts, monitoring, replications, warm-up, and reproducible output analysis.

A100/100content scan

Is the simpy skill safe?

Clean: nothing in its files matched our rules. We read 16 files in the folder on 2026-09-28.

No findings.

Install the simpy skill

A skill is a folder. Copy it into your agent's skills folder and the agent loads it when the task matches its description.

git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git /tmp/scientific-agent-skills
mkdir -p ~/.claude/skills
cp -r /tmp/scientific-agent-skills/skills/simpy ~/.claude/skills/simpy
available in every project

In the Claude apps, zip the folder and upload it from the Skills settings. The folder on GitHub

The instructions your agent would load

SKILL.md as published, without the frontmatter. Read it on GitHub

SimPy

Scope

Use this skill for process-based discrete-event models where active entities yield events and contend for resources: queues, production systems, logistics, networks, service operations, inventory, and other event-driven systems.

SimPy supplies an event scheduler and modeling primitives. It does not choose a scientifically valid conceptual model, input distribution, warm-up, run length, replication count, estimand, or causal interpretation. Treat those as simulation-study methodology, not SimPy API behavior.

Current release and installation

Verified 2026-07-23:

4.1.2 points to commit f4381649.

  • Latest stable: SimPy 4.1.2, released on PyPI 2026-05-24; source tag

plus PyPy. SimPy has no runtime dependencies.

  • Package metadata requires Python >=3.8 and classifies CPython 3.8-3.14
  • 4.1.2 adds Python 3.13/3.14 support and modern-interpreter test fixes.
  • Upstream and this skill are MIT-licensed.

Create a reproducible environment:

uv venv --python 3.13
source .venv/bin/activate
uv pip install "simpy==4.1.2"
python -c "import importlib.metadata; print(importlib.metadata.version('simpy'))"

Do not silently substitute the latest documentation build: it may describe an unreleased development revision. Use the versioned 4.1.2 links in references/sources.md.

Model workflow

entities, resources, state, outputs, time units, and terminating event or steady-state target.

  1. Define purpose and estimands. State the decision/question, system boundary,

routing, priorities, initial conditions, and omitted mechanisms.

  1. Write a conceptual model first. Record assumptions, distributions,

Register the generator object with env.process(...).

  1. Implement generators. A SimPy process is an event-yielding Python generator.

replication caps. Never call env.run() on a model containing an endless process.

  1. Bound execution. Give every production run explicit time, entity, event, and

stochastic sources; retain a seed manifest.

  1. Separate random streams. Use local RNG instances for logically distinct

close time-weighted intervals at the horizon, and test that monitoring does not alter event order.

  1. Instrument deliberately. Observe state after the transition of interest,

traces, queue discipline, and analytical benchmarks; compare against system or expert evidence for the stated purpose.

  1. Verify and validate. Test deterministic edge cases, conservation identities,

estimates, not correlated entities within one run.

  1. Run independent replications. Make intervals from replication-level

seeds/streams, precision, sensitivity, and validation evidence. Never convert simulation association into a causal claim.

  1. Report limitations. Include initialization, unfinished entities, run length,

Read references/simulation-methodology.md before making inferential claims.

Minimal bounded model

import random
import simpy

HORIZON = 480.0
arrival_rng = random.Random(101)
service_rng = random.Random(202)
env = simpy.Environment()
server = simpy.Resource(env, capacity=2)
completed = []

def customer(arrival):
    with server.request() as request:
        yield request
        wait = env.now - arrival
        yield env.timeout(service_rng.expovariate(1 / 6.0))
    completed.append((env.now, wait))

def arrivals():
    for _ in range(10_000):  # Entity cap.
        delay = arrival_rng.expovariate(1 / 4.0)
        if env.now + delay >= HORIZON:
            return
        yield env.timeout(delay)
        env.process(customer(env.now))

env.process(arrivals())
env.run(until=HORIZON)

The numeric horizon is half-open: normal events scheduled exactly at 480.0 are not processed. Report unfinished entities rather than silently treating them as completed observations.

Core semantics

Environment and deterministic ordering

Environment is single-threaded. The queue is ordered by simulation time, event priority, then a strictly increasing event ID. Same-time, same-priority events are therefore processed FIFO in scheduling order. Model processes may represent concurrency, but callbacks execute sequentially and deterministically.

  • env.now: unitless simulation clock; choose and document one unit.
  • env.peek(): next event time or infinity.
  • env.step(): process one event; raises EmptySchedule when empty.
  • env.active_process: currently executing process, otherwise None.
  • env.run(): drain the queue; unsafe with recurring or endless processes.

env.run(until=number) and env.run(until=event) are not interchangeable at boundaries:

that exact time.

  • A numeric value schedules an urgent stop event and excludes ordinary events at

Other same-time ordering depends on priority and scheduling order.

  • An Event criterion returns that event's value when its stop callback fires.

StopSimulation by rescheduling the target. Consequently, after env.run(until=target), target.processed can remain False until one more step()/run() even though its value was returned. Do not use processed as the sole post-run completion test.

  • In 4.1.2, Environment.step() preserves callbacks remaining after

See references/events.md and references/monitoring.md.

Event, Timeout, Process, and Condition

succeed(value) or fail(exception) triggers it once.

  • An Event moves once through not-triggered -> triggered/scheduled -> processed.

manually succeeded again.

  • A Timeout triggers when created, is scheduled for now + delay, and cannot be

yielded event value. Returning from the generator succeeds the Process with that return value. Uncaught exceptions fail it.

  • env.process(generator) creates a Process; the generator resumes with the

dict-like mapping from event objects to their values. Test membership using the original event objects; do not assume a scalar result.

  • AnyOf / a | b and AllOf / a & b yield a ConditionValue: an ordered,

requests when abandoning them; ordinary timeouts remain scheduled.

  • AnyOf does not cancel losing events. Explicitly cancel pending resource

More skills from K-Dense-AI/scientific-agent-skills

  • AadaptyvHow to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding assays, protein screening experiments, BLI/SPR assays, thermostability assays, or wants to submit protein sequences for experimental characterization. Also trigger when code imports `adaptyv`, `adaptyv_sdk`, or `FoundryClient`, or references `foundry-api-public.adaptyvbio.com`.
  • AaeonThis skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
  • AalphagenomeLook up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), score variants or scan windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and build Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.
  • Aanalytical-method-validationPlan, execute, and document validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025. Use for HPLC, LC-MS/MS, GC, CE, ICP-MS, dissolution, qNMR, qPCR, NIR, and ligand binding or cell-based assays whenever the question is whether a procedure is fit for its intended purpose. Triggers include "method validation", "analytical method validation", "AMV", "validation protocol", "acceptance criteria", "linearity", "reportable range", "accuracy and precision", "repeatability", "intermediate precision", "recovery", "LOD", "LOQ", "detection limit", "quantitation limit", "specificity", "robustness", "method transfer", "method comparison", "Deming", "Passing-Bablok", "Bland-Altman", "equivalence testing", "OOS investigation", "ICH Q2", "Q2(R2)", "Q14", "USP 1225", "ICH M10", "incurred sample reanalysis", "ISR", "CLSI EP", and any request to show that an assay works.
  • AanndataData structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
  • AarborAutonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an evaluator, using Hypothesis Tree Refinement (HTR) from the Arbor paper. Use this whenever someone wants to iteratively optimize something over many experiments without overfitting — e.g. "get my model's eval score up", "improve this agent/harness", "tune this pipeline", "beat the baseline on this benchmark", "run a search over approaches and keep the best", "do an MLE-bench / Kaggle-style optimization", or any long-horizon "make this artifact better and don't just memorize the dev set" task. Trigger it even when the user doesn't say "Arbor" or "hypothesis tree" but describes repeated experiment-and-evaluate loops, branching exploration of competing ideas, or worries about a dev/test gap. Runs Claude itself as the coordinator with subagent executors in isolated git worktrees; for the standalone `arbor` CLI tool see references/arbor-upstream.md.
  • AarboretoInfer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
  • AastropyCore Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
  • AautoskillObserve the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks to analyze their recent work and propose skills based on what they actually do. Requires the screenpipe daemon (https://github.com/screenpipe/screenpipe) running locally on port 3030 — the skill has no other data source and will refuse to run if screenpipe is unreachable. All detection runs locally; only redacted cluster summaries reach the LLM.
  • Abenchling-integrationBenchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.
  • Abgpt-paper-searchSearch scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.
  • AbidsUse this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.

All agent skills → · MCP servers